Perhaps I take it too seriously. And I don’t wish to push this Cole interpretation too far. I think, of course, that there are many ways of viewing Spectre and I don’t wish to exclude them. I'm hardly "political" myself but I am a long-time Bond fan whose enthusiasm for the series has definitely been reinvigorated with the Craig films. We might agree that one of the distinctive factors in these films is their greater engagement with a recognizable reality both within Bond (broadly speaking, the psychological) and around Bond (again, broadly speaking, the socio-political world), all within the overarching confines of a traditionally-delimited genre often dismissed as escapist fantasy.
Arguably, it is this very tension (reality vs. fantasy) that make’s Craig’s films--especially, Spectre--both so fascinating and problematic (in the positive sense of provoking so many questions, including the real “eye-opener” of Nine/Five Eyes). I can appreciate—and even applaud—one’s desire to avoid “the political,” if by that word we mean the typical squabbling that we encounter in the partisan debate of the U.S. Republican vs. Democrat model. I’m not interested in that at all; but rather in the word “political” as used by the ancient Greeks (and, Dustin, I mention this because I’m loving your references to the mythos of Bond’s antecedents) – i.e. of “the polis,” or “the city,” so much of which involves the heroes of Greek drama delineated by their interaction with the civilized world around them, partly in the service of entertainment and partly in the service of civic instruction. [What is mythology to us, was, of course, religion to them—please excuse the pedantry.]
Perhaps I’m wrong, but it’s barely conceivable that the Connery/Moore Bonds would have “gone rogue” in the manner of Craig (or even Dalton before him). How many times, now? I’ve read many complaints from fans regarding this; especially in their desire to see Bond receive from M a “normal” mission. But isn’t it interesting that not only does Bond go rogue, again, in Spectre, but so do, essentially, M (most ironically) and Q (and Moneypenny and Tanner?). It’s the whole crew this time! Crucially, they all have had to go rogue in order to re-establish British Intelligence within a legal (and moral) framework by wresting it away from “C” (and by extension, Blofeld, himself). Can this be dismissed as merely a subplot tenuously connected the world around us? If you wish, but if so it’s given far more weight than any subplot in the history of the franchise. So much so, that in many ways, M, as much as Bond, is the true hero of Spectre.
Oh, there have no doubt been vast changes in society since the days of Fleming. Wars were fought since, undeclared. Some wars were declared based on lies and projected profits. And last not least a PotUS was assassinated and few people believe the case was investigated as it should have been. To name just a few US issues, other countries went through similar or worse things. Blind obedience nowadays is rightfully viewed with scepticism.
In short, society - Western society at any rate - suffers from a massive crisis of its institutions and its people's belief in these, as well as from values that are constantly challenged by its own leaders, that much is evident.
Consequently, Bond's world - which mirrors ours in terms of the general state of affairs - must show similar signs of entropy in its institutions. Unless, that is, we want it to be entirely fictional and about as relevant as Steamboat Willie for our time.
But the fact is, apart from some lip service in SPECTRE, the theme of Big Brother and the nineheaded monster Denbigh was about to create was not once really used with any consequence. Actually, the very article you linked explained the dangers in a few sentences more detailed than the entire film does in over two and a half hours.
Questions like 'quis custodiet ipsos custodes' are mentioned - and answered with the revolt of the entire home team. But we weren't treated to the sight of a blackmailed character, didn't even get a sniff of the true potential of this amassed information in the hands of people nobody actually voted into their offices. So the whole Nine Eyes treatment was hardly more than a McGuffin to set things in motion. It's a theme that is in the air now, also because it's a global shift towards we-don't-know-what yet. But SPECTRE uses it only in a very broad sense and Bond himself doesn't quit because of fundamental differences with the general nature of his duty.
He quits because he's simply had enough.